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rs585740392 SNP Detail
Summary
  • ID
    rs585740392
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:122237933 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGAAA AGAAAAAAAA GAAAAGAAAA
    R
    AAAGAAAAGA AAAGAAAGAA AAGAA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
JF1/MsJ
KK/HlJ
MA/MyJ
NZB/BlNJ
NZO/HlLtJ
PWK/PhJ
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
ZALENDE/EiJ
ss917672997 MGP_WTSI_5_122099870 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
JF1/MsJ
KK/HlJ
MA/MyJ
NZB/BlNJ
NZO/HlLtJ
PWK/PhJ
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
ZALENDE/EiJ
rs585740392 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss917672997 MGP_WTSI_5_122099870 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:122237933 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm57283 predicted gene, 57283 1603 bp downstream
Myl2 myosin, light polypeptide 2, regulatory, cardiac, slow 1081 bp upstream
Rr124298 regulatory region 124298 1067 bp proximal
Rr407055 regulatory region 407055 848 bp proximal
Tssr48619 transcription start site region 48619 914 bp upstream
Tssr48620 transcription start site region 48620 946 bp upstream
Tssr48621 transcription start site region 48621 1074 bp upstream
Tssr48622 transcription start site region 48622 1102 bp upstream
Tssr48623 transcription start site region 48623 1276 bp upstream
Tssr48624 transcription start site region 48624 1293 bp upstream
Tssr48625 transcription start site region 48625 1907 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory