rs585740392 SNP Detail

Summary

• ID
  rs585740392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122237933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AGAAAAAAAA GAAAAGAAAA
  R
  AAAGAAAAGA AAAGAAAGAA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss917672997	MGP_WTSI_5_122099870	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs585740392					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917672997	MGP_WTSI_5_122099870	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122237933 () rs orientation: forward

Symbol	Name	Function Class
Gm57283	predicted gene, 57283	1603 bp downstream
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	1081 bp upstream
Rr124298	regulatory region 124298	1067 bp proximal
Rr407055	regulatory region 407055	848 bp proximal
Tssr48619	transcription start site region 48619	914 bp upstream
Tssr48620	transcription start site region 48620	946 bp upstream
Tssr48621	transcription start site region 48621	1074 bp upstream
Tssr48622	transcription start site region 48622	1102 bp upstream
Tssr48623	transcription start site region 48623	1276 bp upstream
Tssr48624	transcription start site region 48624	1293 bp upstream
Tssr48625	transcription start site region 48625	1907 bp upstream