AGAAA AGAAAAAAAA GAAAAGAAAA R AAAGAAAAGA AAAGAAAGAA AAGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | AKR/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
JF1/MsJ |
KK/HlJ |
MA/MyJ |
NZB/BlNJ |
NZO/HlLtJ |
PWK/PhJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss917672997 | MGP_WTSI_5_122099870 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | AKR/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
JF1/MsJ |
KK/HlJ |
MA/MyJ |
NZB/BlNJ |
NZO/HlLtJ |
PWK/PhJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
ZALENDE/EiJ |
||||
rs585740392 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss917672997 | MGP_WTSI_5_122099870 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr5:122237933 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm57283 | predicted gene, 57283 | 1603 bp downstream | ||||||
Myl2 | myosin, light polypeptide 2, regulatory, cardiac, slow | 1081 bp upstream | ||||||
Rr124298 | regulatory region 124298 | 1067 bp proximal | ||||||
Rr407055 | regulatory region 407055 | 848 bp proximal | ||||||
Tssr48619 | transcription start site region 48619 | 914 bp upstream | ||||||
Tssr48620 | transcription start site region 48620 | 946 bp upstream | ||||||
Tssr48621 | transcription start site region 48621 | 1074 bp upstream | ||||||
Tssr48622 | transcription start site region 48622 | 1102 bp upstream | ||||||
Tssr48623 | transcription start site region 48623 | 1276 bp upstream | ||||||
Tssr48624 | transcription start site region 48624 | 1293 bp upstream | ||||||
Tssr48625 | transcription start site region 48625 | 1907 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/10/2024 MGI 6.24 |
![]() |
|