rs585764230 SNP Detail

Summary

• ID
  rs585764230
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3071967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TGTAAAACCC TAACATGTTG
  D
  TGTAGTGAGG CCTAGGTCTG CCAGA                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	QSi5/Ianm	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss920693823	MGP_WTSI_11_3121967	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	A	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	QSi5/Ianm	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs585764230					SNP	G	G	G	G	G	A	A	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693823	MGP_WTSI_11_3121967	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3071967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1297 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1854 bp upstream
Rr402381	regulatory region 402381	742 bp downstream
Rr441449	regulatory region 441449	182 bp proximal
Rr441450	regulatory region 441450	952 bp proximal
Rr441451	regulatory region 441451	1359 bp proximal
Rr441452	regulatory region 441452	1518 bp proximal
Tssr106442	transcription start site region 106442	1938 bp downstream