rs585804112 SNP Detail

Summary

• ID
  rs585804112
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45817557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CTCCTCCGCC GCGCCCCCCT
  A
  GTCCCGCCGT CCCGACCCGC GCGCG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919808020	MGP_WTSI_9_45906259	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585804112					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919808020	MGP_WTSI_9_45906259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45817557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	238 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	within coordinates
Rr677993	regulatory region 677993	138 bp proximal
Rr677994	regulatory region 677994	182 bp proximal
Rr677995	regulatory region 677995	249 bp proximal
Rr677996	regulatory region 677996	250 bp proximal
Rr677997	regulatory region 677997	600 bp proximal
Rr677998	regulatory region 677998	737 bp proximal
Rr677999	regulatory region 677999	1399 bp proximal
Tssr84815	transcription start site region 84815	254 bp upstream
Tssr84816	transcription start site region 84816	666 bp upstream
Tssr89273	transcription start site region 89273	110 bp downstream
Tssr89274	transcription start site region 89274	578 bp downstream
Tssr89275	transcription start site region 89275	639 bp downstream
Tssr89276	transcription start site region 89276	1326 bp downstream