rs585809650 SNP Detail

Summary

• ID
  rs585809650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:6737987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA CACAACAAAC
  R
  ACCCCCCCCA ACACCACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZB/BlNJ	RF/J	SWR/J
ss918500243	MGP_WTSI_7_6734988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	NZB/BlNJ	RF/J	SWR/J
rs585809650					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918500243	MGP_WTSI_7_6734988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:6737987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr64457	transcription start site region 64457			850 bp downstream
Usp29	ubiquitin specific peptidase 29			Intron
				Noncoding-Transcript-Variant