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rs585809831 SNP Detail
Summary
  • ID
    rs585809831
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93353218 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAAGA GCAGCTGCGG GACAGACCAT
Y
CCGCCGGGAA CAAGAACGCC GCCTG                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289614 MGP_WTSI_3_93445911 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585809831 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289614 MGP_WTSI_3_93445911 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353218 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1117 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr961 transcription start site region 961 1905 bp downstream
Tssr962 transcription start site region 962 785 bp downstream
Tssr963 transcription start site region 963 749 bp downstream
Tssr964 transcription start site region 964 650 bp downstream
Tssr30359 transcription start site region 30359 1982 bp downstream
Tssr30360 transcription start site region 30360 1952 bp downstream
Tssr30361 transcription start site region 30361 1627 bp downstream
Tssr30362 transcription start site region 30362 1611 bp downstream
Tssr30363 transcription start site region 30363 1469 bp downstream
Tssr30364 transcription start site region 30364 1397 bp downstream
Tssr30365 transcription start site region 30365 1362 bp downstream
Tssr30366 transcription start site region 30366 1309 bp downstream
Tssr30367 transcription start site region 30367 1270 bp downstream
Tssr30368 transcription start site region 30368 1246 bp downstream
Tssr30369 transcription start site region 30369 1242 bp downstream
Tssr30370 transcription start site region 30370 1233 bp downstream
Tssr30371 transcription start site region 30371 1206 bp downstream
Tssr30372 transcription start site region 30372 1196 bp downstream
Tssr30373 transcription start site region 30373 1143 bp downstream
Tssr30374 transcription start site region 30374 1129 bp downstream
Tssr30375 transcription start site region 30375 1116 bp downstream
Tssr30376 transcription start site region 30376 1080 bp downstream
Tssr30377 transcription start site region 30377 1054 bp downstream
Tssr30378 transcription start site region 30378 1032 bp downstream
Tssr30379 transcription start site region 30379 1015 bp downstream
Tssr30380 transcription start site region 30380 936 bp downstream
Tssr30381 transcription start site region 30381 919 bp downstream
Tssr30382 transcription start site region 30382 864 bp downstream
Tssr30383 transcription start site region 30383 853 bp downstream
Tssr30384 transcription start site region 30384 844 bp downstream
Tssr30385 transcription start site region 30385 819 bp downstream
Tssr30386 transcription start site region 30386 797 bp downstream
Tssr30387 transcription start site region 30387 703 bp downstream
Tssr30388 transcription start site region 30388 684 bp downstream
Tssr30389 transcription start site region 30389 662 bp downstream
Tssr30390 transcription start site region 30390 591 bp downstream
Tssr30391 transcription start site region 30391 581 bp downstream
Tssr30392 transcription start site region 30392 563 bp downstream
Tssr30393 transcription start site region 30393 552 bp downstream
Tssr30394 transcription start site region 30394 526 bp downstream
Tssr30395 transcription start site region 30395 499 bp downstream
Tssr30396 transcription start site region 30396 449 bp downstream
Tssr30397 transcription start site region 30397 433 bp downstream
Tssr30398 transcription start site region 30398 355 bp downstream
Tssr30399 transcription start site region 30399 276 bp downstream
Tssr30400 transcription start site region 30400 165 bp upstream
Tssr30401 transcription start site region 30401 185 bp upstream
Tssr30402 transcription start site region 30402 284 bp upstream
Tssr30403 transcription start site region 30403 324 bp upstream
Tssr30404 transcription start site region 30404 1462 bp upstream
Tssr30405 transcription start site region 30405 1573 bp upstream
Tssr30406 transcription start site region 30406 1721 bp upstream
Tssr30407 transcription start site region 30407 1916 bp upstream
Tssr34354 transcription start site region 34354 1970 bp upstream
Tssr34355 transcription start site region 34355 1873 bp upstream
Tssr34356 transcription start site region 34356 1192 bp upstream
Tssr34357 transcription start site region 34357 1127 bp upstream
Tssr34358 transcription start site region 34358 1068 bp upstream
Tssr34359 transcription start site region 34359 993 bp upstream
Tssr34360 transcription start site region 34360 948 bp upstream
Tssr34361 transcription start site region 34361 891 bp upstream
Tssr34362 transcription start site region 34362 878 bp upstream
Tssr34363 transcription start site region 34363 853 bp upstream
Tssr34364 transcription start site region 34364 838 bp upstream
Tssr34365 transcription start site region 34365 812 bp upstream
Tssr34366 transcription start site region 34366 744 bp upstream
Tssr34367 transcription start site region 34367 579 bp upstream
Tssr34368 transcription start site region 34368 549 bp upstream
Tssr34369 transcription start site region 34369 523 bp upstream
Tssr34370 transcription start site region 34370 497 bp upstream
Tssr34371 transcription start site region 34371 354 bp upstream
Tssr34372 transcription start site region 34372 297 bp downstream
Tssr34373 transcription start site region 34373 1465 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory