rs585828042 SNP Detail

Summary

• ID
  rs585828042
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA GGCAACTACA TGGGATGTTT
  A
  AAAAAAAAAA TCCAGTTAAC ATATT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J
ss917868766	MGP_WTSI_6_17462265	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J
rs585828042					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917868766	MGP_WTSI_6_17462265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	1050 bp proximal
Met	met proto-oncogene	1535 bp upstream
Rr626799	regulatory region 626799	1045 bp proximal
Rr626800	regulatory region 626800	1209 bp proximal
Rr626801	regulatory region 626801	1252 bp proximal
Rr626802	regulatory region 626802	1784 bp proximal
Tssr55050	transcription start site region 55050	1167 bp upstream
Tssr55051	transcription start site region 55051	1290 bp upstream
Tssr55052	transcription start site region 55052	1484 bp upstream
Tssr55053	transcription start site region 55053	1561 bp upstream
Tssr55054	transcription start site region 55054	1620 bp upstream
Tssr55055	transcription start site region 55055	1636 bp upstream
Tssr55056	transcription start site region 55056	1662 bp upstream
Tssr55057	transcription start site region 55057	1827 bp upstream
Tssr55058	transcription start site region 55058	1867 bp upstream
Tssr55059	transcription start site region 55059	1906 bp upstream