rs585873313 SNP Detail

Summary

• ID
  rs585873313
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96093156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGA AAAACCAAAA AAAAAAAAAA
  M
  CAAAAAAAAA AACAAAAAAA AAAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss921032305	MGP_WTSI_11_96202330	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs585873313					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921032305	MGP_WTSI_11_96202330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96093156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	928 bp proximal
Gm11538	predicted gene 11538	1124 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Rr386513	regulatory region 386513	1572 bp downstream
Rr455321	regulatory region 455321	851 bp distal
Rr455322	regulatory region 455322	112 bp distal
Rr455323	regulatory region 455323	43 bp proximal
Rr455324	regulatory region 455324	522 bp proximal
Rr455325	regulatory region 455325	1127 bp proximal
Tssr104437	transcription start site region 104437	1111 bp upstream