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rs585875129 SNP Detail
Summary
  • ID
    rs585875129
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr1:149979704 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCCTC CTCACATCCC TGAGAACCTG
C
AGTTTGCTGT GGGGCAGGAA GTCTT                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059790 MGP_WTSI_1_150103953 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585875129 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059790 MGP_WTSI_1_150103953 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979704 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 297 bp proximal
Rr24983 regulatory region 24983 329 bp proximal
Tssr242 transcription start site region 242 1148 bp downstream
Tssr9230 transcription start site region 9230 1840 bp downstream
Tssr9231 transcription start site region 9231 1807 bp downstream
Tssr9232 transcription start site region 9232 1764 bp downstream
Tssr9233 transcription start site region 9233 1308 bp downstream
Tssr9234 transcription start site region 9234 1279 bp downstream
Tssr9235 transcription start site region 9235 1248 bp downstream
Tssr9236 transcription start site region 9236 1223 bp downstream
Tssr9237 transcription start site region 9237 1191 bp downstream
Tssr9238 transcription start site region 9238 1160 bp downstream
Tssr9239 transcription start site region 9239 1126 bp downstream
Tssr9240 transcription start site region 9240 1112 bp downstream
Tssr9241 transcription start site region 9241 1082 bp downstream
Tssr9242 transcription start site region 9242 1066 bp downstream
Tssr9243 transcription start site region 9243 939 bp downstream
Tssr9244 transcription start site region 9244 888 bp downstream
Tssr9245 transcription start site region 9245 852 bp downstream
Tssr9246 transcription start site region 9246 833 bp downstream
Tssr9247 transcription start site region 9247 698 bp downstream
Tssr9248 transcription start site region 9248 265 bp downstream
Tssr9249 transcription start site region 9249 251 bp downstream
Tssr9250 transcription start site region 9250 50 bp downstream
Tssr9251 transcription start site region 9251 within coordinates
Tssr9252 transcription start site region 9252 8 bp upstream
Tssr9253 transcription start site region 9253 38 bp upstream
Tssr9254 transcription start site region 9254 65 bp upstream
Tssr9255 transcription start site region 9255 84 bp upstream
Tssr9256 transcription start site region 9256 324 bp upstream
Tssr9257 transcription start site region 9257 348 bp upstream
Tssr9258 transcription start site region 9258 371 bp upstream
Tssr9259 transcription start site region 9259 396 bp upstream
Tssr9260 transcription start site region 9260 451 bp upstream
Tssr9261 transcription start site region 9261 506 bp upstream
Tssr9262 transcription start site region 9262 514 bp upstream
Tssr9263 transcription start site region 9263 536 bp upstream
Tssr9264 transcription start site region 9264 581 bp upstream
Tssr9265 transcription start site region 9265 612 bp upstream
Tssr9266 transcription start site region 9266 701 bp upstream
Tssr9267 transcription start site region 9267 992 bp upstream
Tssr9268 transcription start site region 9268 1048 bp upstream
Tssr9269 transcription start site region 9269 1431 bp upstream
Tssr9270 transcription start site region 9270 1471 bp upstream
Tssr9271 transcription start site region 9271 1495 bp upstream
Tssr9272 transcription start site region 9272 1525 bp upstream
Tssr9273 transcription start site region 9273 1577 bp upstream
Tssr9274 transcription start site region 9274 1595 bp upstream
Tssr9275 transcription start site region 9275 1622 bp upstream
Tssr9276 transcription start site region 9276 1637 bp upstream
Tssr9277 transcription start site region 9277 1687 bp upstream
Tssr9278 transcription start site region 9278 1708 bp upstream
Tssr9279 transcription start site region 9279 1729 bp upstream
Tssr9280 transcription start site region 9280 1746 bp upstream
Tssr9281 transcription start site region 9281 1852 bp upstream
Tssr9282 transcription start site region 9282 1887 bp upstream
Tssr9283 transcription start site region 9283 1901 bp upstream
Tssr9284 transcription start site region 9284 1916 bp upstream
Tssr9285 transcription start site region 9285 1926 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory