rs585880364 SNP Detail

Summary

• ID
  rs585880364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:48816388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG CGCGGCGGCG CGGGGCGGGG
  R
  CGCAGTCCCG GGTCCGACTG GCCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss921821446	MGP_WTSI_13_48662912	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs585880364					SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921821446	MGP_WTSI_13_48662912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:48816388 () rs orientation: forward

Symbol	Name	Function Class
Barx1	BarH-like homeobox 1	124 bp upstream
Cpgi5567	CpG island 5567	within coordinates
Cpgi5568	CpG island 5568	1974 bp proximal
Gm36606	predicted gene, 36606	120 bp upstream
Rr281361	regulatory region 281361	within coordinates
Tssr119663	transcription start site region 119663	373 bp downstream
Tssr119664	transcription start site region 119664	24 bp downstream
Tssr119665	transcription start site region 119665	within coordinates
Tssr119666	transcription start site region 119666	47 bp upstream
Tssr119667	transcription start site region 119667	77 bp upstream
Tssr119668	transcription start site region 119668	150 bp upstream
Tssr122399	transcription start site region 122399	164 bp upstream