rs585893235 SNP Detail

Summary

• ID
  rs585893235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACACACAC
  R
  CACACGTAGA TGAAGAAACT CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss921523874	MGP_WTSI_12_100887642	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	G	A	A	A	G	A	A	G	G	G	A	A	A	G	A	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs585893235					SNP	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	G	A	A	A	G	A	A	G	G	G	A	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921523874	MGP_WTSI_12_100887642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853901 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	429 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	36 bp proximal
Rr471363	regulatory region 471363	257 bp proximal
Tssr114718	transcription start site region 114718	1761 bp downstream
Tssr117330	transcription start site region 117330	194 bp downstream
Tssr117331	transcription start site region 117331	228 bp downstream
Tssr117332	transcription start site region 117332	248 bp downstream
Tssr117333	transcription start site region 117333	283 bp downstream
Tssr117334	transcription start site region 117334	309 bp downstream
Tssr117335	transcription start site region 117335	384 bp downstream
Tssr117336	transcription start site region 117336	431 bp downstream