rs585918830 SNP Detail

Summary

• ID
  rs585918830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74536039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CCGAGGTCAG CGGCCGCCAC
  R
  CCGCCGCCCT GCAGCTCTAT GGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss915491293	MGP_WTSI_2_74705695	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs585918830					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915491293	MGP_WTSI_2_74705695	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74536039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11800	CpG island 11800			within coordinates
Gm38462	predicted gene, 38462			within coordinates
Hoxd8	homeobox D8			Coding-NonSynonymous
				Intron
Igs15	intergenic site 15			within coordinates
Rr559363	regulatory region 559363			1446 bp distal
Rr559364	regulatory region 559364			1070 bp distal
Rr559365	regulatory region 559365			949 bp distal
Rr559366	regulatory region 559366			944 bp distal
Rr559367	regulatory region 559367			533 bp distal
Rr559368	regulatory region 559368			666 bp proximal
Rr559369	regulatory region 559369			1953 bp proximal
Tssr18420	transcription start site region 18420			1150 bp downstream
Tssr18421	transcription start site region 18421			1047 bp downstream
Tssr18422	transcription start site region 18422			858 bp downstream
Tssr18423	transcription start site region 18423			781 bp downstream
Tssr18424	transcription start site region 18424			766 bp downstream
Tssr18425	transcription start site region 18425			617 bp downstream
Tssr18426	transcription start site region 18426			594 bp downstream
Tssr18427	transcription start site region 18427			539 bp downstream
Tssr18428	transcription start site region 18428			506 bp downstream
Tssr18429	transcription start site region 18429			317 bp downstream
Tssr18430	transcription start site region 18430			43 bp upstream
Tssr24623	transcription start site region 24623			120 bp downstream