rs585935550 SNP Detail

Summary

• ID
  rs585935550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172334476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTCTCTCTCT CTCTCTCTCT
  Y
  TCTCTCTCTC TCTCTCTCTG GGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss915129459	MGP_WTSI_1_172506909	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	T	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs585935550					SNP	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915129459	MGP_WTSI_1_172506909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172334476 () rs orientation: forward

Symbol	Name	Function Class
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	1609 bp downstream
Tssr10220	transcription start site region 10220	1138 bp downstream
Tssr10221	transcription start site region 10221	1103 bp downstream
Tssr10222	transcription start site region 10222	1010 bp downstream
Tssr10223	transcription start site region 10223	642 bp downstream
Tssr10224	transcription start site region 10224	325 bp downstream
Tssr10225	transcription start site region 10225	286 bp downstream
Tssr10226	transcription start site region 10226	267 bp downstream
Tssr10227	transcription start site region 10227	205 bp downstream
Tssr10228	transcription start site region 10228	174 bp downstream
Tssr10229	transcription start site region 10229	124 bp downstream
Tssr10230	transcription start site region 10230	59 bp downstream
Tssr10231	transcription start site region 10231	49 bp downstream
Tssr10232	transcription start site region 10232	within coordinates
Tssr10233	transcription start site region 10233	17 bp upstream
Tssr10234	transcription start site region 10234	76 bp upstream
Tssr15226	transcription start site region 15226	13 bp upstream
Tssr15227	transcription start site region 15227	36 bp downstream