rs585952025 SNP Detail

Summary

• ID
  rs585952025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC AGAAAAACCC TGTCTCCACA
  Y
  ACACACACAC ACACACACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss924088010	MGP_WTSI_18_82586497	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs585952025					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924088010	MGP_WTSI_18_82586497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604622 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	within coordinates
Gm58829	predicted gene, 58829	859 bp upstream
Mbp	myelin basic protein	860 bp downstream
Tssr152159	transcription start site region 152159	1981 bp downstream
Tssr152160	transcription start site region 152160	1935 bp downstream
Tssr152161	transcription start site region 152161	1919 bp downstream
Tssr152162	transcription start site region 152162	1898 bp downstream
Tssr152163	transcription start site region 152163	1881 bp downstream
Tssr152164	transcription start site region 152164	1836 bp downstream
Tssr152165	transcription start site region 152165	1763 bp downstream
Tssr152166	transcription start site region 152166	1727 bp downstream
Tssr152167	transcription start site region 152167	1695 bp downstream
Tssr152168	transcription start site region 152168	1666 bp downstream
Tssr152169	transcription start site region 152169	1613 bp downstream
Tssr152170	transcription start site region 152170	1505 bp downstream
Tssr152171	transcription start site region 152171	1461 bp downstream
Tssr152172	transcription start site region 152172	1358 bp downstream
Tssr152173	transcription start site region 152173	1343 bp downstream
Tssr152174	transcription start site region 152174	1309 bp downstream
Tssr152175	transcription start site region 152175	1274 bp downstream
Tssr152176	transcription start site region 152176	1085 bp downstream
Tssr152177	transcription start site region 152177	905 bp downstream
Tssr154085	transcription start site region 154085	1956 bp upstream
Tssr154086	transcription start site region 154086	1410 bp upstream
Tssr154087	transcription start site region 154087	1189 bp upstream
Tssr154088	transcription start site region 154088	1160 bp upstream
Tssr154089	transcription start site region 154089	1042 bp upstream
Tssr154090	transcription start site region 154090	982 bp upstream