rs585952658 SNP Detail

Summary

• ID
  rs585952658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117691155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC TGTCTCAAAT CCCCCCCCCC
  M
  AAAAAAAAGC CCACAGGCAC AACAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss917024995	MGP_WTSI_4_117833958	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	C	A	A	C	C	A	A	A	A	A	C	A	A	C	C	C	A	A	A	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs585952658					SNP	A	A	A	C	A	A	C	A	A	C	C	A	A	A	A	A	C	A	A	C	C	C	A	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917024995	MGP_WTSI_4_117833958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117691155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	1300 bp proximal
Gm17114	predicted gene 17114	1341 bp downstream
Rr598223	regulatory region 598223	993 bp distal
Rr598224	regulatory region 598224	458 bp proximal
Rr598225	regulatory region 598225	603 bp proximal
Rr598226	regulatory region 598226	1450 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1085 bp upstream
Tssr38631	transcription start site region 38631	1277 bp upstream
Tssr38632	transcription start site region 38632	1320 bp upstream
Tssr38633	transcription start site region 38633	1346 bp upstream
Tssr38634	transcription start site region 38634	1380 bp upstream
Tssr38635	transcription start site region 38635	1429 bp upstream
Tssr42994	transcription start site region 42994	1887 bp downstream