rs585966550 SNP Detail

Summary

• ID
  rs585966550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129445552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GTAGTGGCTA GGGAGGGGGT
  R
  GCCTGCTGCT GCTGCTGTGG TGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BUB/BnJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss915687059	MGP_WTSI_2_129603632	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BUB/BnJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs585966550					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915687059	MGP_WTSI_2_129603632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129445552 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	within coordinates
Rr564957	regulatory region 564957	437 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20145	transcription start site region 20145	1415 bp downstream
Tssr20146	transcription start site region 20146	98 bp upstream