rs585970581 SNP Detail

Summary

• ID
  rs585970581
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT CTCATTTACA GAGTCCCTGG
  T
  GGGTCTGGGA TATGCTTCAG TGGTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920637009	MGP_WTSI_10_117279049	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585970581					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920637009	MGP_WTSI_10_117279049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114954 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	217 bp downstream
Lyz2	lysozyme 2	Intron
Tssr95904	transcription start site region 95904	1709 bp downstream
Tssr95905	transcription start site region 95905	1641 bp downstream
Tssr95906	transcription start site region 95906	1587 bp downstream
Tssr95907	transcription start site region 95907	1554 bp downstream
Tssr95908	transcription start site region 95908	1373 bp downstream
Tssr95909	transcription start site region 95909	1283 bp downstream
Tssr95910	transcription start site region 95910	1137 bp downstream
Tssr95911	transcription start site region 95911	1029 bp downstream
Tssr95912	transcription start site region 95912	958 bp downstream
Tssr95913	transcription start site region 95913	881 bp downstream
Tssr95914	transcription start site region 95914	1585 bp upstream
Tssr95915	transcription start site region 95915	1663 bp upstream
Tssr99410	transcription start site region 99410	1597 bp upstream
Tssr99411	transcription start site region 99411	1519 bp upstream
Tssr99412	transcription start site region 99412	1413 bp upstream
Tssr99413	transcription start site region 99413	1360 bp upstream
Tssr99414	transcription start site region 99414	1246 bp upstream
Tssr99415	transcription start site region 99415	1186 bp upstream
Tssr99416	transcription start site region 99416	1119 bp upstream
Tssr99417	transcription start site region 99417	1044 bp upstream
Tssr99418	transcription start site region 99418	1025 bp upstream
Tssr99419	transcription start site region 99419	987 bp upstream
Tssr99420	transcription start site region 99420	929 bp upstream
Tssr99421	transcription start site region 99421	853 bp upstream
Tssr99422	transcription start site region 99422	131 bp upstream
Tssr99423	transcription start site region 99423	1618 bp downstream
Tssr99424	transcription start site region 99424	1686 bp downstream
Tssr99425	transcription start site region 99425	1731 bp downstream
Tssr99426	transcription start site region 99426	1953 bp downstream