GGGGG AGGGAGGATG GAAGGAAGGA M GGAAGGAAGG AAGGAAGGAA GGAAG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BUB/BnJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
CAST/EiJ |
CE/J |
CZECHII/EiJ |
FVB/NJ |
KK/HlJ |
LG/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss921114466 | MGP_WTSI_11_119266225 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BUB/BnJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
CAST/EiJ |
CE/J |
CZECHII/EiJ |
FVB/NJ |
KK/HlJ |
LG/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
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rs585977353 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss921114466 | MGP_WTSI_11_119266225 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C/G |
Location: Chr11:119157051 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ccdc40 | coiled-coil domain containing 40 | 987 bp downstream | ||||||
Cpgi4265 | CpG island 4265 | 1429 bp proximal | ||||||
Gaa | glucosidase, alpha, acid | 1738 bp upstream | ||||||
Rr232403 | regulatory region 232403 | 51 bp distal | ||||||
Rr239320 | regulatory region 239320 | 1251 bp distal | ||||||
Rr239321 | regulatory region 239321 | 851 bp distal | ||||||
Rr246278 | regulatory region 246278 | 1349 bp proximal | ||||||
Rr403185 | regulatory region 403185 | 1631 bp upstream | ||||||
Tssr106170 | transcription start site region 106170 | 1732 bp upstream | ||||||
Tssr106171 | transcription start site region 106171 | 1779 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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