rs586090142 SNP Detail

Summary

• ID
  rs586090142
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:113138283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA AGAAGGGAGG GGGAGGGGAA
  S
  GGGGGAGGGG GAGGGGGAAG AGGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/2J	LP/J	NON/ShiLtJ	NZO/HlLtJ	ST/bJ
ss921093427	MGP_WTSI_11_113247457	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/2J	LP/J	NON/ShiLtJ	NZO/HlLtJ	ST/bJ
rs586090142					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921093427	MGP_WTSI_11_113247457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113138283 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr27	DNA Segment, Chr 11, Derry C. Roopenian 27	499 bp distal
D11Mit168	DNA segment, Chr 11, Massachusetts Institute of Technology 168	463 bp distal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11	within coordinates