rs586106041 SNP Detail

Summary

• ID
  rs586106041
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3491940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC ATTGGGTTTA TTTGACTTAC
  T
  GATCCACCAT CCTGGTTTAT TTGAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	KK/HlJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ
ss924125932	MGP_WTSI_19_3441940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	KK/HlJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ
rs586106041					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924125932	MGP_WTSI_19_3441940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3491940 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	141 bp distal
Rr542416	regulatory region 542416	444 bp distal
Tssr157389	transcription start site region 157389	1033 bp upstream
Tssr157390	transcription start site region 157390	664 bp upstream
Tssr157391	transcription start site region 157391	636 bp upstream