rs586106693 SNP Detail

Summary

• ID
  rs586106693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58664552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA CATCCCGATA CTTGACGAAG
  Y
  ATTCACACAT CCCGATACTT GACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924349415	MGP_WTSI_19_58676120	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586106693					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924349415	MGP_WTSI_19_58676120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58664552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	within coordinates
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	952 bp distal
Rr365894	regulatory region 365894	849 bp proximal
Tssr157271	transcription start site region 157271	1055 bp downstream
Tssr157272	transcription start site region 157272	1039 bp downstream
Tssr157273	transcription start site region 157273	78 bp upstream
Tssr157274	transcription start site region 157274	110 bp upstream
Tssr157275	transcription start site region 157275	130 bp upstream
Tssr157276	transcription start site region 157276	153 bp upstream
Tssr157277	transcription start site region 157277	394 bp upstream
Tssr157278	transcription start site region 157278	1016 bp upstream
Tssr157279	transcription start site region 157279	1033 bp upstream
Tssr157280	transcription start site region 157280	1049 bp upstream
Tssr159961	transcription start site region 159961	950 bp upstream