rs586114756 SNP Detail

Summary

• ID
  rs586114756
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC TCCCTCCCTC CCTCCCTCCC
  T
  CCCTCCCTCC CTCCCTCCCT CCCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
ss917081706	MGP_WTSI_4_132073966	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
rs586114756					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917081706	MGP_WTSI_4_132073966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	424 bp proximal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	731 bp upstream
Rr1070	regulatory region 1070	1303 bp upstream
Rr600863	regulatory region 600863	760 bp distal
Rr600864	regulatory region 600864	241 bp proximal
Rr600865	regulatory region 600865	742 bp proximal
Rr600866	regulatory region 600866	1316 bp proximal
Tssr39361	transcription start site region 39361	1638 bp upstream
Tssr43633	transcription start site region 43633	1284 bp downstream
Tssr43634	transcription start site region 43634	1333 bp downstream
Tssr43635	transcription start site region 43635	1451 bp downstream