rs586153366 SNP Detail

Summary

• ID
  rs586153366
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118429967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACACACGG
  C
  GGGGGGGGGG GGTGAGAATA AATAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ
ss915657029	MGP_WTSI_2_118599486	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ
rs586153366					SNP	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915657029	MGP_WTSI_2_118599486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118429967 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12084	CpG island 12084	856 bp distal
Rr397211	regulatory region 397211	1149 bp downstream
Rr563273	regulatory region 563273	1265 bp distal
Rr563274	regulatory region 563274	714 bp distal
Rr563275	regulatory region 563275	32 bp distal
Tssr19562	transcription start site region 19562	1260 bp downstream
Tssr19563	transcription start site region 19563	1219 bp downstream
Tssr19564	transcription start site region 19564	1186 bp downstream