rs586154106 SNP Detail

Summary

• ID
  rs586154106
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67198834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTCTCTCT CTCTCTTTCT
  T
  TCTCTCTCTC TTTCTTTCTT TCTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SM/J	ST/bJ
ss914714587	MGP_WTSI_1_67159675	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SM/J	ST/bJ
rs586154106					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914714587	MGP_WTSI_1_67159675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67198834 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7208	transcription start site region 7208	1852 bp downstream
Tssr7209	transcription start site region 7209	282 bp downstream
Tssr7210	transcription start site region 7210	243 bp downstream
Tssr7211	transcription start site region 7211	204 bp downstream
Tssr7212	transcription start site region 7212	1216 bp upstream