rs586157863 SNP Detail

Summary

• ID
  rs586157863
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112064159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  B
  CTCGCTCGCA GGATTTCGAT CTCTC                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920032634	MGP_WTSI_9_112235091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586157863					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920032634	MGP_WTSI_9_112235091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112064159 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	within coordinates
Gm68368	predicted gene, 68368	within coordinates
Rr687421	regulatory region 687421	758 bp distal
Rr687422	regulatory region 687422	84 bp distal
Rr687423	regulatory region 687423	within coordinates
Tssr87517	transcription start site region 87517	840 bp downstream
Tssr87518	transcription start site region 87518	778 bp downstream
Tssr91798	transcription start site region 91798	1963 bp upstream
Tssr91799	transcription start site region 91799	1837 bp upstream
Tssr91800	transcription start site region 91800	1822 bp upstream
Tssr91801	transcription start site region 91801	1805 bp upstream
Tssr91802	transcription start site region 91802	1768 bp upstream
Tssr91803	transcription start site region 91803	1679 bp upstream
Tssr91804	transcription start site region 91804	1521 bp upstream
Tssr91805	transcription start site region 91805	472 bp upstream
Tssr91806	transcription start site region 91806	447 bp upstream
Tssr91807	transcription start site region 91807	269 bp upstream
Tssr91808	transcription start site region 91808	233 bp upstream
Tssr91809	transcription start site region 91809	188 bp upstream
Tssr91810	transcription start site region 91810	124 bp upstream
Tssr91811	transcription start site region 91811	51 bp downstream
Tssr91812	transcription start site region 91812	361 bp downstream
Tssr91813	transcription start site region 91813	420 bp downstream
Tssr91814	transcription start site region 91814	739 bp downstream
Tssr91815	transcription start site region 91815	763 bp downstream
Tssr91816	transcription start site region 91816	798 bp downstream
Tssr91817	transcription start site region 91817	809 bp downstream
Tssr91818	transcription start site region 91818	828 bp downstream
Tssr91819	transcription start site region 91819	849 bp downstream
Tssr91820	transcription start site region 91820	875 bp downstream