rs586178305 SNP Detail

Summary

• ID
  rs586178305
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19749057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT ACCCGCCTTG GTCTTGTCTC
  M
  CTTCCCTTCC CTTCCCTTCC CTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NZW/LacJ	PWK/PhJ	RF/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss919170329	MGP_WTSI_8_19699041	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NZW/LacJ	PWK/PhJ	RF/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs586178305					SNP	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919170329	MGP_WTSI_8_19699041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19749057 () rs orientation: forward

Symbol	Name	Function Class
Gm6483	predicted gene 6483	1305 bp downstream
Gm64856	predicted gene, 64856	within coordinates
Rr175760	regulatory region 175760	57 bp distal
Rr175761	regulatory region 175761	1144 bp proximal
Rr183693	regulatory region 183693	1117 bp distal
Rr183694	regulatory region 183694	314 bp proximal
Rr183695	regulatory region 183695	1044 bp proximal
Rr183696	regulatory region 183696	1825 bp proximal
Rr188939	regulatory region 188939	within coordinates
Rr381772	regulatory region 381772	within coordinates