rs586200850 SNP Detail

Summary

• ID
  rs586200850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55149078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACAGACA CACACACACA
  S
  ACACACACAT ATAGACATTA ACATA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ST/bJ
ss918017934	MGP_WTSI_6_55172093	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ST/bJ
rs586200850					SNP	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918017934	MGP_WTSI_6_55172093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55149078 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136025	regulatory region 136025	78 bp distal
Rr144444	regulatory region 144444	1471 bp distal
Rr144445	regulatory region 144445	113 bp distal
Rr146343	regulatory region 146343	1322 bp proximal
Tssr61113	transcription start site region 61113	1381 bp downstream
Tssr61114	transcription start site region 61114	1834 bp downstream