rs586214787 SNP Detail

Summary

• ID
  rs586214787
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93354322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG CAGAGAGCAA GAGCTCCGCC
  G
  GGAGCAAGAG TTCCGCCGGG AGCAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916289631	MGP_WTSI_3_93447015	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586214787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916289631	MGP_WTSI_3_93447015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93354322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Rr580538	regulatory region 580538	1731 bp distal
Rr580539	regulatory region 580539	838 bp proximal
Tchh	trichohyalin	within coordinates
Tssr962	transcription start site region 962	1889 bp downstream
Tssr963	transcription start site region 963	1853 bp downstream
Tssr964	transcription start site region 964	1754 bp downstream
Tssr30382	transcription start site region 30382	1968 bp downstream
Tssr30383	transcription start site region 30383	1957 bp downstream
Tssr30384	transcription start site region 30384	1948 bp downstream
Tssr30385	transcription start site region 30385	1923 bp downstream
Tssr30386	transcription start site region 30386	1901 bp downstream
Tssr30387	transcription start site region 30387	1807 bp downstream
Tssr30388	transcription start site region 30388	1788 bp downstream
Tssr30389	transcription start site region 30389	1766 bp downstream
Tssr30390	transcription start site region 30390	1695 bp downstream
Tssr30391	transcription start site region 30391	1685 bp downstream
Tssr30392	transcription start site region 30392	1667 bp downstream
Tssr30393	transcription start site region 30393	1656 bp downstream
Tssr30394	transcription start site region 30394	1630 bp downstream
Tssr30395	transcription start site region 30395	1603 bp downstream
Tssr30396	transcription start site region 30396	1553 bp downstream
Tssr30397	transcription start site region 30397	1537 bp downstream
Tssr30398	transcription start site region 30398	1459 bp downstream
Tssr30399	transcription start site region 30399	1380 bp downstream
Tssr30400	transcription start site region 30400	931 bp downstream
Tssr30401	transcription start site region 30401	910 bp downstream
Tssr30402	transcription start site region 30402	810 bp downstream
Tssr30403	transcription start site region 30403	773 bp downstream
Tssr30404	transcription start site region 30404	358 bp upstream
Tssr30405	transcription start site region 30405	469 bp upstream
Tssr30406	transcription start site region 30406	617 bp upstream
Tssr30407	transcription start site region 30407	812 bp upstream
Tssr34361	transcription start site region 34361	1995 bp upstream
Tssr34362	transcription start site region 34362	1982 bp upstream
Tssr34363	transcription start site region 34363	1957 bp upstream
Tssr34364	transcription start site region 34364	1942 bp upstream
Tssr34365	transcription start site region 34365	1916 bp upstream
Tssr34366	transcription start site region 34366	1848 bp upstream
Tssr34367	transcription start site region 34367	1683 bp upstream
Tssr34368	transcription start site region 34368	1653 bp upstream
Tssr34369	transcription start site region 34369	1627 bp upstream
Tssr34370	transcription start site region 34370	1601 bp upstream
Tssr34371	transcription start site region 34371	1458 bp upstream
Tssr34372	transcription start site region 34372	797 bp upstream
Tssr34373	transcription start site region 34373	361 bp downstream