ACAAC AGCAACAACA ACAACAACAA Y AACAATAACA AAACAAAACA AAACC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
KK/HlJ |
LG/J |
LP/J |
NOD/ShiLtJ |
NON/ShiLtJ |
PL/J |
QSi3/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss920000411 | MGP_WTSI_9_103413178 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
KK/HlJ |
LG/J |
LP/J |
NOD/ShiLtJ |
NON/ShiLtJ |
PL/J |
QSi3/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
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rs586221424 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss920000411 | MGP_WTSI_9_103413178 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr9:103290377 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
D9Mgc25 | DNA segment, Chr 9, MRC UK Mouse Genome Centre 25 | 1111 bp proximal | ||||||
D9Mit242 | DNA segment, Chr 9, Massachusetts Institute of Technology 242 | 189 bp proximal | ||||||
Gm47328 | predicted gene, 47328 | within coordinates | ||||||
Gm69201 | predicted gene, 69201 | within coordinates | ||||||
Rr198513 | regulatory region 198513 | 777 bp distal | ||||||
Rr198514 | regulatory region 198514 | 377 bp distal | ||||||
Rr207103 | regulatory region 207103 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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