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rs586228100 SNP Detail
Summary
  • ID
    rs586228100
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr5:137178810 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTTGT GATTTCAGGT GTGGTGGTGA
S
ATCAGCAGTG ATGGTGACAT CACCA                                      

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss917727710 MGP_WTSI_5_137149962 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586228100 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727710 MGP_WTSI_5_137149962 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178810 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 694 bp upstream
Tssr1678 transcription start site region 1678 522 bp downstream
Tssr1679 transcription start site region 1679 1465 bp downstream
Tssr1680 transcription start site region 1680 1485 bp upstream
Tssr1681 transcription start site region 1681 1508 bp downstream
Tssr1682 transcription start site region 1682 1525 bp downstream
Tssr1683 transcription start site region 1683 1614 bp downstream
Tssr1684 transcription start site region 1684 1630 bp downstream
Tssr1685 transcription start site region 1685 1644 bp upstream
Tssr1686 transcription start site region 1686 1671 bp downstream
Tssr1687 transcription start site region 1687 1722 bp downstream
Tssr1688 transcription start site region 1688 1746 bp downstream
Tssr1689 transcription start site region 1689 1765 bp upstream
Tssr1690 transcription start site region 1690 1932 bp upstream
Tssr1691 transcription start site region 1691 1936 bp downstream
Tssr49309 transcription start site region 49309 161 bp downstream
Tssr49310 transcription start site region 49310 176 bp upstream
Tssr49311 transcription start site region 49311 190 bp upstream
Tssr49312 transcription start site region 49312 570 bp upstream
Tssr49313 transcription start site region 49313 818 bp upstream
Tssr49314 transcription start site region 49314 1089 bp upstream
Tssr49315 transcription start site region 49315 1105 bp upstream
Tssr53919 transcription start site region 53919 314 bp upstream
Tssr53920 transcription start site region 53920 279 bp upstream
Tssr53921 transcription start site region 53921 121 bp upstream
Tssr53922 transcription start site region 53922 105 bp upstream
Tssr53923 transcription start site region 53923 63 bp upstream
Tssr53924 transcription start site region 53924 44 bp upstream
Tssr53925 transcription start site region 53925 12 bp upstream
Tssr53926 transcription start site region 53926 12 bp downstream
Tssr53927 transcription start site region 53927 161 bp downstream
Tssr53928 transcription start site region 53928 179 bp downstream
Tssr53929 transcription start site region 53929 216 bp downstream
Tssr53930 transcription start site region 53930 281 bp downstream
Tssr53931 transcription start site region 53931 306 bp downstream
Tssr53932 transcription start site region 53932 322 bp downstream
Tssr53933 transcription start site region 53933 360 bp downstream
Tssr53934 transcription start site region 53934 392 bp downstream
Tssr53935 transcription start site region 53935 443 bp downstream
Tssr53936 transcription start site region 53936 464 bp downstream
Tssr53937 transcription start site region 53937 554 bp downstream
Tssr53938 transcription start site region 53938 590 bp downstream
Tssr53939 transcription start site region 53939 644 bp downstream
Tssr53940 transcription start site region 53940 820 bp downstream
Tssr53941 transcription start site region 53941 860 bp downstream
Tssr53942 transcription start site region 53942 919 bp downstream
Tssr53943 transcription start site region 53943 1084 bp downstream
Tssr53944 transcription start site region 53944 1133 bp downstream
Tssr53945 transcription start site region 53945 1143 bp downstream
Tssr53946 transcription start site region 53946 1164 bp downstream
Tssr53947 transcription start site region 53947 1272 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory