rs586231800 SNP Detail

Summary

• ID
  rs586231800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66271958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC TCTATAGAAA TTGTTTTATT
  Y
  TATTTTATTT TATTTTGTTT TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss915464011	MGP_WTSI_2_66441614	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	T	T	C	C	C	T	T	T	T	T	C	C	T	C	C	C	T	T	T	T	T	C	C	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs586231800					SNP	T	C	C	C	C	C	T	T	C	C	C	T	T	T	T	T	C	C	T	C	C	C	T	T	T	T	T	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915464011	MGP_WTSI_2_66441614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66271958 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558183	regulatory region 558183	715 bp distal
Scn1a	sodium channel, voltage-gated, type I, alpha	777 bp upstream
Tssr18000	transcription start site region 18000	709 bp downstream
Tssr18001	transcription start site region 18001	685 bp downstream
Tssr24381	transcription start site region 24381	768 bp upstream
Tssr24382	transcription start site region 24382	709 bp upstream
Tssr24383	transcription start site region 24383	452 bp upstream