rs586235167 SNP Detail

Summary

• ID
  rs586235167
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124784163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTTTCTTTCT TTCTTTCTTT
  S
  TTTTTGTTTT TGTTTTTGTT TTTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss918347156	MGP_WTSI_6_124807200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs586235167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918347156	MGP_WTSI_6_124807200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124784163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17970	CpG island 17970	1321 bp distal
Cpgi17971	CpG island 17971	1475 bp proximal
Gm67865	predicted gene, 67865	1057 bp upstream
Gm67886	predicted gene, 67886	322 bp downstream
Rr145728	regulatory region 145728	837 bp proximal
Rr399917	regulatory region 399917	1367 bp downstream
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	1477 bp upstream
Tssr58845	transcription start site region 58845	1346 bp downstream
Tssr58846	transcription start site region 58846	1458 bp upstream
Tssr58847	transcription start site region 58847	1698 bp upstream
Tssr58848	transcription start site region 58848	1736 bp upstream
Tssr63166	transcription start site region 63166	1455 bp upstream