rs586250876 SNP Detail

Summary

• ID
  rs586250876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94901621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT CTCCCGCCTG AGGAAATTAA
  W
  AAGAGAGAGA GGAGAGAAAG GGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921028839	MGP_WTSI_11_95010795	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586250876					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921028839	MGP_WTSI_11_95010795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94901621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	134 bp distal
Gm36385	predicted gene, 36385	544 bp upstream
Gm51875	predicted gene, 51875	1461 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr250	regulatory region 250	1527 bp proximal
Rr454923	regulatory region 454923	1452 bp distal
Rr454924	regulatory region 454924	906 bp distal
Rr454925	regulatory region 454925	555 bp distal
Rr454926	regulatory region 454926	54 bp distal
Rr454927	regulatory region 454927	185 bp proximal
Rr454928	regulatory region 454928	1093 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104328	transcription start site region 104328	1013 bp downstream
Tssr104329	transcription start site region 104329	905 bp downstream
Tssr104330	transcription start site region 104330	876 bp downstream
Tssr104331	transcription start site region 104331	848 bp downstream
Tssr104332	transcription start site region 104332	832 bp downstream
Tssr104333	transcription start site region 104333	766 bp downstream
Tssr104334	transcription start site region 104334	709 bp downstream
Tssr104335	transcription start site region 104335	680 bp downstream
Tssr104336	transcription start site region 104336	610 bp downstream
Tssr104337	transcription start site region 104337	519 bp downstream
Tssr104338	transcription start site region 104338	502 bp downstream
Tssr104339	transcription start site region 104339	430 bp downstream
Tssr104340	transcription start site region 104340	416 bp downstream
Tssr104341	transcription start site region 104341	376 bp downstream
Tssr104342	transcription start site region 104342	312 bp downstream
Tssr110238	transcription start site region 110238	470 bp upstream
Tssr110239	transcription start site region 110239	1397 bp downstream