rs586253531 SNP Detail

Summary

• ID
  rs586253531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115524394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC AACTTCTCCA TATATATATA
  Y
  ATATATATAT ATATATATAT ATATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss921102063	MGP_WTSI_11_115633568	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs586253531					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921102063	MGP_WTSI_11_115633568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115524394 () rs orientation: forward

Symbol	Name	Function Class
Gm74409	predicted gene, 74409	1804 bp upstream
Rr231925	regulatory region 231925	1594 bp distal
Rr231926	regulatory region 231926	1607 bp proximal
Rr243179	regulatory region 243179	1885 bp proximal
Rr369445	regulatory region 369445	1767 bp downstream
Rr403120	regulatory region 403120	412 bp downstream
Rr403121	regulatory region 403121	805 bp upstream