TGAGG CAGGAACTGA GGCGCGAGCA
A
GAGCTAAGGC GCGAGCAGGA GTTGA
A = A
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss916289611 | MGP_WTSI_3_93444208 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
| rs586260889 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss916289611 | MGP_WTSI_3_93444208 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
| Location: Chr3:93351515 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Cpgi13475 | CpG island 13475 | within coordinates | ||||||
| Gm37245 | predicted gene, 37245 | within coordinates | ||||||
| Gm56800 | predicted gene, 56800 | within coordinates | ||||||
| Gm66249 | predicted gene, 66249 | within coordinates | ||||||
| Tchh | trichohyalin | within coordinates | ||||||
| Tssr960 | transcription start site region 960 | 778 bp downstream | ||||||
| Tssr961 | transcription start site region 961 | 202 bp downstream | ||||||
| Tssr962 | transcription start site region 962 | 915 bp upstream | ||||||
| Tssr963 | transcription start site region 963 | 952 bp upstream | ||||||
| Tssr964 | transcription start site region 964 | 1048 bp upstream | ||||||
| Tssr30345 | transcription start site region 30345 | 1819 bp downstream | ||||||
| Tssr30346 | transcription start site region 30346 | 1794 bp downstream | ||||||
| Tssr30347 | transcription start site region 30347 | 735 bp downstream | ||||||
| Tssr30348 | transcription start site region 30348 | 715 bp downstream | ||||||
| Tssr30349 | transcription start site region 30349 | 703 bp downstream | ||||||
| Tssr30350 | transcription start site region 30350 | 659 bp downstream | ||||||
| Tssr30351 | transcription start site region 30351 | 635 bp downstream | ||||||
| Tssr30352 | transcription start site region 30352 | 585 bp downstream | ||||||
| Tssr30353 | transcription start site region 30353 | 566 bp downstream | ||||||
| Tssr30354 | transcription start site region 30354 | 551 bp downstream | ||||||
| Tssr30355 | transcription start site region 30355 | 532 bp downstream | ||||||
| Tssr30356 | transcription start site region 30356 | 478 bp downstream | ||||||
| Tssr30357 | transcription start site region 30357 | 423 bp downstream | ||||||
| Tssr30358 | transcription start site region 30358 | 305 bp downstream | ||||||
| Tssr30359 | transcription start site region 30359 | 279 bp downstream | ||||||
| Tssr30360 | transcription start site region 30360 | 249 bp downstream | ||||||
| Tssr30361 | transcription start site region 30361 | 69 bp upstream | ||||||
| Tssr30362 | transcription start site region 30362 | 83 bp upstream | ||||||
| Tssr30363 | transcription start site region 30363 | 226 bp upstream | ||||||
| Tssr30364 | transcription start site region 30364 | 297 bp upstream | ||||||
| Tssr30365 | transcription start site region 30365 | 332 bp upstream | ||||||
| Tssr30366 | transcription start site region 30366 | 384 bp upstream | ||||||
| Tssr30367 | transcription start site region 30367 | 428 bp upstream | ||||||
| Tssr30368 | transcription start site region 30368 | 445 bp upstream | ||||||
| Tssr30369 | transcription start site region 30369 | 458 bp upstream | ||||||
| Tssr30370 | transcription start site region 30370 | 465 bp upstream | ||||||
| Tssr30371 | transcription start site region 30371 | 485 bp upstream | ||||||
| Tssr30372 | transcription start site region 30372 | 498 bp upstream | ||||||
| Tssr30373 | transcription start site region 30373 | 549 bp upstream | ||||||
| Tssr30374 | transcription start site region 30374 | 567 bp upstream | ||||||
| Tssr30375 | transcription start site region 30375 | 580 bp upstream | ||||||
| Tssr30376 | transcription start site region 30376 | 606 bp upstream | ||||||
| Tssr30377 | transcription start site region 30377 | 628 bp upstream | ||||||
| Tssr30378 | transcription start site region 30378 | 661 bp upstream | ||||||
| Tssr30379 | transcription start site region 30379 | 679 bp upstream | ||||||
| Tssr30380 | transcription start site region 30380 | 759 bp upstream | ||||||
| Tssr30381 | transcription start site region 30381 | 777 bp upstream | ||||||
| Tssr30382 | transcription start site region 30382 | 836 bp upstream | ||||||
| Tssr30383 | transcription start site region 30383 | 847 bp upstream | ||||||
| Tssr30384 | transcription start site region 30384 | 856 bp upstream | ||||||
| Tssr30385 | transcription start site region 30385 | 872 bp upstream | ||||||
| Tssr30386 | transcription start site region 30386 | 893 bp upstream | ||||||
| Tssr30387 | transcription start site region 30387 | 984 bp upstream | ||||||
| Tssr30388 | transcription start site region 30388 | 1010 bp upstream | ||||||
| Tssr30389 | transcription start site region 30389 | 1024 bp upstream | ||||||
| Tssr30390 | transcription start site region 30390 | 1096 bp upstream | ||||||
| Tssr30391 | transcription start site region 30391 | 1115 bp upstream | ||||||
| Tssr30392 | transcription start site region 30392 | 1133 bp upstream | ||||||
| Tssr30393 | transcription start site region 30393 | 1150 bp upstream | ||||||
| Tssr30394 | transcription start site region 30394 | 1170 bp upstream | ||||||
| Tssr30395 | transcription start site region 30395 | 1195 bp upstream | ||||||
| Tssr30396 | transcription start site region 30396 | 1244 bp upstream | ||||||
| Tssr30397 | transcription start site region 30397 | 1261 bp upstream | ||||||
| Tssr30398 | transcription start site region 30398 | 1336 bp upstream | ||||||
| Tssr30399 | transcription start site region 30399 | 1383 bp upstream | ||||||
| Tssr30400 | transcription start site region 30400 | 1868 bp upstream | ||||||
| Tssr30401 | transcription start site region 30401 | 1888 bp upstream | ||||||
| Tssr30402 | transcription start site region 30402 | 1987 bp upstream | ||||||
| Tssr34352 | transcription start site region 34352 | 324 bp upstream | ||||||
| Tssr34353 | transcription start site region 34353 | 318 bp upstream | ||||||
| Tssr34354 | transcription start site region 34354 | 267 bp upstream | ||||||
| Tssr34355 | transcription start site region 34355 | 170 bp upstream | ||||||
| Tssr34356 | transcription start site region 34356 | 497 bp downstream | ||||||
| Tssr34357 | transcription start site region 34357 | 542 bp downstream | ||||||
| Tssr34358 | transcription start site region 34358 | 594 bp downstream | ||||||
| Tssr34359 | transcription start site region 34359 | 663 bp downstream | ||||||
| Tssr34360 | transcription start site region 34360 | 744 bp downstream | ||||||
| Tssr34361 | transcription start site region 34361 | 765 bp downstream | ||||||
| Tssr34362 | transcription start site region 34362 | 814 bp downstream | ||||||
| Tssr34363 | transcription start site region 34363 | 841 bp downstream | ||||||
| Tssr34364 | transcription start site region 34364 | 858 bp downstream | ||||||
| Tssr34365 | transcription start site region 34365 | 872 bp downstream | ||||||
| Tssr34366 | transcription start site region 34366 | 932 bp downstream | ||||||
| Tssr34367 | transcription start site region 34367 | 1065 bp downstream | ||||||
| Tssr34368 | transcription start site region 34368 | 1144 bp downstream | ||||||
| Tssr34369 | transcription start site region 34369 | 1169 bp downstream | ||||||
| Tssr34370 | transcription start site region 34370 | 1183 bp downstream | ||||||
| Tssr34371 | transcription start site region 34371 | 1237 bp downstream | ||||||
| Tssr34372 | transcription start site region 34372 | 2000 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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