rs586265720 SNP Detail

Summary

• ID
  rs586265720
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT CGTGGGGTTG AGCTTGTGAA
  W
  CTGATCGGGA TCACAGCATC CCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920637012	MGP_WTSI_10_117279094	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586265720					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920637012	MGP_WTSI_10_117279094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114999 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	262 bp downstream
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1754 bp downstream
Tssr95905	transcription start site region 95905	1686 bp downstream
Tssr95906	transcription start site region 95906	1632 bp downstream
Tssr95907	transcription start site region 95907	1599 bp downstream
Tssr95908	transcription start site region 95908	1418 bp downstream
Tssr95909	transcription start site region 95909	1328 bp downstream
Tssr95910	transcription start site region 95910	1182 bp downstream
Tssr95911	transcription start site region 95911	1074 bp downstream
Tssr95912	transcription start site region 95912	1003 bp downstream
Tssr95913	transcription start site region 95913	926 bp downstream
Tssr95914	transcription start site region 95914	1540 bp upstream
Tssr95915	transcription start site region 95915	1618 bp upstream
Tssr99410	transcription start site region 99410	1642 bp upstream
Tssr99411	transcription start site region 99411	1564 bp upstream
Tssr99412	transcription start site region 99412	1458 bp upstream
Tssr99413	transcription start site region 99413	1405 bp upstream
Tssr99414	transcription start site region 99414	1291 bp upstream
Tssr99415	transcription start site region 99415	1231 bp upstream
Tssr99416	transcription start site region 99416	1164 bp upstream
Tssr99417	transcription start site region 99417	1089 bp upstream
Tssr99418	transcription start site region 99418	1070 bp upstream
Tssr99419	transcription start site region 99419	1032 bp upstream
Tssr99420	transcription start site region 99420	974 bp upstream
Tssr99421	transcription start site region 99421	898 bp upstream
Tssr99422	transcription start site region 99422	176 bp upstream
Tssr99423	transcription start site region 99423	1573 bp downstream
Tssr99424	transcription start site region 99424	1641 bp downstream
Tssr99425	transcription start site region 99425	1686 bp downstream
Tssr99426	transcription start site region 99426	1908 bp downstream