rs586267715 SNP Detail

Summary

• ID
  rs586267715
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125396189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTCCTTC CTTCCTTCCT
  C
  CCCTCCCCTC CCCTCCCTCC CCTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	PL/J	QSi3/Ianm	SJL/J	ZALENDE/EiJ
ss918349177	MGP_WTSI_6_125419226	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	PL/J	QSi3/Ianm	SJL/J	ZALENDE/EiJ
rs586267715					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918349177	MGP_WTSI_6_125419226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125396189 () rs orientation: forward

Symbol	Name	Function Class
D6Jpk2	DNA segment, Chr 6, Japan, Kominami 2	1094 bp distal
Gm66368	predicted gene, 66368	within coordinates
Gm66372	predicted gene, 66372	403 bp downstream
Rr638702	regulatory region 638702	1317 bp distal
Rr638703	regulatory region 638703	15 bp distal
Rr638704	regulatory region 638704	296 bp distal
Rr638705	regulatory region 638705	133 bp proximal
Rr638706	regulatory region 638706	1389 bp proximal