rs586336058 SNP Detail

Summary

• ID
  rs586336058
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180772949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TGTGTGTGTG
  T
  GTGTGCGCGC GCACGAGCAT GTGCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915161573	MGP_WTSI_1_180945384	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586336058					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915161573	MGP_WTSI_1_180945384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180772949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1128	CpG island 1128	1761 bp distal
Rr424647	regulatory region 424647	1774 bp distal
Rr424648	regulatory region 424648	1339 bp distal
Rr424649	regulatory region 424649	1351 bp distal
Rr424650	regulatory region 424650	1205 bp distal
Rr424651	regulatory region 424651	within coordinates
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	1313 bp downstream
Tssr10508	transcription start site region 10508	514 bp upstream