rs586344020 SNP Detail

Summary

• ID
  rs586344020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126069218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT CAGAAGACAC TAAGCAGACC
  M
  CCCCCCCCCC CCTTAGAAAC CTGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss919038965	MGP_WTSI_7_126470046	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs586344020					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919038965	MGP_WTSI_7_126470046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126069218 () rs orientation: forward

Symbol	Name	Function Class
Sh2b1	SH2B adaptor protein 1	within coordinates
Tssr69026	transcription start site region 69026	339 bp upstream
Tssr74716	transcription start site region 74716	146 bp downstream
Tssr74717	transcription start site region 74717	1398 bp downstream