rs586362893 SNP Detail

Summary

• ID
  rs586362893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91760656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCG TTCAACTTTT TAACCCTCGC
  S
  CCCCCCCCCC CCCTTTAAAG ACAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ
ss915558552	MGP_WTSI_2_91930311	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ
rs586362893					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915558552	MGP_WTSI_2_91930311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91760656 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1623 bp downstream
Cpgi11915	CpG island 11915	1548 bp distal
Cpgi11916	CpG island 11916	743 bp proximal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	1558 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	1653 bp proximal
Gm39876	predicted gene, 39876	1239 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560807	regulatory region 560807	1882 bp distal
Rr560808	regulatory region 560808	907 bp distal
Rr560809	regulatory region 560809	84 bp distal
Rr560810	regulatory region 560810	1367 bp proximal
Rr560811	regulatory region 560811	1976 bp proximal
Tssr18929	transcription start site region 18929	635 bp downstream
Tssr25211	transcription start site region 25211	421 bp upstream
Tssr25212	transcription start site region 25212	407 bp upstream
Tssr25213	transcription start site region 25213	608 bp downstream
Tssr25214	transcription start site region 25214	1140 bp downstream
Tssr25215	transcription start site region 25215	1350 bp downstream
Tssr25216	transcription start site region 25216	1364 bp downstream
Tssr25217	transcription start site region 25217	1385 bp downstream
Tssr25218	transcription start site region 25218	1417 bp downstream
Tssr25219	transcription start site region 25219	1463 bp downstream
Tssr25220	transcription start site region 25220	1644 bp downstream
Tssr25221	transcription start site region 25221	1683 bp downstream