rs586402878 SNP Detail

Summary

• ID
  rs586402878
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GAGAGACAAA GAGGCAGAGA
  V
  ACAGAGACAG AAACAGAGAG ACAGA                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921033276	MGP_WTSI_11_96546000	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	A	C	C	A	C	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	C	A	A	C	C	C	A	A	A	C	C	C	C	C	C	A	C	G	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586402878					SNP	A	A	A	C	C	A	C	C	A	C	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	C	A	A	C	C	C	A	A	A	C	C	C	C	C	C	A	C	G	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921033276	MGP_WTSI_11_96546000	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436826 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	375 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1277 bp downstream
Tssr104544	transcription start site region 104544	605 bp downstream
Tssr104545	transcription start site region 104545	567 bp downstream
Tssr104546	transcription start site region 104546	551 bp downstream
Tssr104547	transcription start site region 104547	519 bp downstream
Tssr104548	transcription start site region 104548	419 bp downstream
Tssr104549	transcription start site region 104549	402 bp downstream
Tssr104550	transcription start site region 104550	351 bp downstream
Tssr104551	transcription start site region 104551	311 bp downstream
Tssr104552	transcription start site region 104552	303 bp downstream
Tssr104553	transcription start site region 104553	1027 bp upstream