rs586404135 SNP Detail

Summary

• ID
  rs586404135
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141011495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGCAGCCGAG GGGAGGGCAG
  C
  GGAGGGGAGG GCAGCCGAGG GGAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss924901081	MGP_WTSI_X_142228499	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs586404135					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924901081	MGP_WTSI_X_142228499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141011495 () rs orientation: forward

Symbol	Name	Function Class
Nxt2	nuclear transport factor 2-like export factor 2	within coordinates
Rr8327	regulatory region 8327	within coordinates
Rr406176	regulatory region 406176	480 bp downstream
Tssr162232	transcription start site region 162232	1693 bp downstream
Tssr162233	transcription start site region 162233	548 bp downstream
Tssr162234	transcription start site region 162234	249 bp downstream
Tssr162235	transcription start site region 162235	193 bp downstream
Tssr162236	transcription start site region 162236	200 bp upstream