rs586428904 SNP Detail

Summary

• ID
  rs586428904
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT AGGCACTAGA AACCCAACCC
  C
  AAGAACTATC CTGACCTTTT CAAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059776	MGP_WTSI_1_150101422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586428904					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059776	MGP_WTSI_1_150101422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1101 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1548 bp upstream
Tssr242	transcription start site region 242	1378 bp upstream
Tssr9221	transcription start site region 9221	1665 bp downstream
Tssr9222	transcription start site region 9222	1316 bp downstream
Tssr9223	transcription start site region 9223	473 bp downstream
Tssr9224	transcription start site region 9224	365 bp downstream
Tssr9225	transcription start site region 9225	240 bp downstream
Tssr9226	transcription start site region 9226	227 bp downstream
Tssr9227	transcription start site region 9227	149 bp downstream
Tssr9228	transcription start site region 9228	109 bp downstream
Tssr9229	transcription start site region 9229	96 bp downstream
Tssr9230	transcription start site region 9230	555 bp upstream
Tssr9231	transcription start site region 9231	707 bp upstream
Tssr9232	transcription start site region 9232	747 bp upstream
Tssr9233	transcription start site region 9233	1220 bp upstream
Tssr9234	transcription start site region 9234	1224 bp upstream
Tssr9235	transcription start site region 9235	1264 bp upstream
Tssr9236	transcription start site region 9236	1301 bp upstream
Tssr9237	transcription start site region 9237	1320 bp upstream
Tssr9238	transcription start site region 9238	1349 bp upstream
Tssr9239	transcription start site region 9239	1390 bp upstream
Tssr9240	transcription start site region 9240	1412 bp upstream
Tssr9241	transcription start site region 9241	1438 bp upstream
Tssr9242	transcription start site region 9242	1458 bp upstream
Tssr9243	transcription start site region 9243	1582 bp upstream
Tssr9244	transcription start site region 9244	1627 bp upstream
Tssr9245	transcription start site region 9245	1647 bp upstream
Tssr9246	transcription start site region 9246	1684 bp upstream
Tssr9247	transcription start site region 9247	1823 bp upstream
Tssr14127	transcription start site region 14127	1867 bp upstream
Tssr14128	transcription start site region 14128	1812 bp upstream
Tssr14129	transcription start site region 14129	1737 bp upstream
Tssr14130	transcription start site region 14130	160 bp upstream
Tssr14131	transcription start site region 14131	104 bp upstream