rs586448454 SNP Detail

Summary

• ID
  rs586448454
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26639166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT TCCTCCCTCC CTCCCTCCCT
  C
  CCTCCCTTCC TTCCTTCCTT TCTTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	WSB/EiJ	ZALENDE/EiJ
ss918609746	MGP_WTSI_7_26939741	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	WSB/EiJ	ZALENDE/EiJ
rs586448454					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918609746	MGP_WTSI_7_26939741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26639166 () rs orientation: forward

Symbol	Name	Function Class
Cyp2a22	cytochrome P450, family 2, subfamily a, polypeptide 22	328 bp upstream
Rr155590	regulatory region 155590	1835 bp proximal
Rr164580	regulatory region 164580	75 bp distal
Rr164581	regulatory region 164581	1953 bp proximal
Tssr71335	transcription start site region 71335	351 bp upstream