rs586457940 SNP Detail

Summary

• ID
  rs586457940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TGCTGACAGT GAGTCTGTTC
  Y
  AAGCTCCAGT GAGGGAGGCA TCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SWR/J	WSB/EiJ
ss923468833	MGP_WTSI_17_21475080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	T	T	T	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SWR/J	WSB/EiJ
rs586457940					SNP	C	C	C	C	C	C	C	T	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923468833	MGP_WTSI_17_21475080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695342 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	82 bp downstream
Rr522958	regulatory region 522958	1864 bp distal
Rr522959	regulatory region 522959	919 bp distal
Rr522960	regulatory region 522960	1376 bp distal
Rr522961	regulatory region 522961	323 bp distal
Rr522962	regulatory region 522962	25 bp distal
Rr522963	regulatory region 522963	1054 bp proximal
Tssr142877	transcription start site region 142877	1214 bp downstream
Tssr142878	transcription start site region 142878	807 bp downstream
Tssr142879	transcription start site region 142879	158 bp downstream