rs586556600 SNP Detail

Summary

• ID
  rs586556600
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44396176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GAGGGAGGGA GGGAGGGAGG
  A
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
ss924296331	MGP_WTSI_19_44407737	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
rs586556600					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924296331	MGP_WTSI_19_44407737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44396176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	86 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	within coordinates
Gm59215	predicted gene, 59215	588 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	28 bp upstream
Tssr5525	transcription start site region 5525	262 bp upstream
Tssr5526	transcription start site region 5526	229 bp upstream
Tssr5527	transcription start site region 5527	219 bp upstream
Tssr5528	transcription start site region 5528	189 bp upstream
Tssr5529	transcription start site region 5529	138 bp upstream
Tssr156612	transcription start site region 156612	1105 bp downstream
Tssr156613	transcription start site region 156613	1006 bp downstream
Tssr156614	transcription start site region 156614	283 bp upstream
Tssr159513	transcription start site region 159513	1155 bp upstream
Tssr159514	transcription start site region 159514	1107 bp upstream
Tssr159515	transcription start site region 159515	1085 bp upstream
Tssr159516	transcription start site region 159516	969 bp upstream
Tssr159517	transcription start site region 159517	239 bp upstream
Tssr159518	transcription start site region 159518	168 bp upstream
Tssr159519	transcription start site region 159519	114 bp upstream
Tssr159520	transcription start site region 159520	69 bp upstream
Tssr159521	transcription start site region 159521	25 bp upstream
Tssr159522	transcription start site region 159522	72 bp downstream
Tssr159523	transcription start site region 159523	94 bp downstream
Tssr159524	transcription start site region 159524	146 bp downstream
Tssr159525	transcription start site region 159525	997 bp downstream
Tssr159526	transcription start site region 159526	1027 bp downstream