rs586594982 SNP Detail

Summary

• ID
  rs586594982
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG GTGGTGACTT CAGCAGTGGT
  A
  GTGACATCAG CAGTGGAGGT GACAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
ss917727739	MGP_WTSI_5_137150677	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
rs586594982					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727739	MGP_WTSI_5_137150677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179525 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1409 bp upstream
Tssr1678	transcription start site region 1678	184 bp upstream
Tssr1679	transcription start site region 1679	750 bp downstream
Tssr1680	transcription start site region 1680	770 bp upstream
Tssr1681	transcription start site region 1681	793 bp downstream
Tssr1682	transcription start site region 1682	810 bp downstream
Tssr1683	transcription start site region 1683	899 bp downstream
Tssr1684	transcription start site region 1684	915 bp downstream
Tssr1685	transcription start site region 1685	929 bp upstream
Tssr1686	transcription start site region 1686	956 bp downstream
Tssr1687	transcription start site region 1687	1007 bp downstream
Tssr1688	transcription start site region 1688	1031 bp downstream
Tssr1689	transcription start site region 1689	1050 bp upstream
Tssr1690	transcription start site region 1690	1217 bp upstream
Tssr1691	transcription start site region 1691	1221 bp downstream
Tssr1692	transcription start site region 1692	1385 bp downstream
Tssr1693	transcription start site region 1693	1527 bp upstream
Tssr1694	transcription start site region 1694	1565 bp downstream
Tssr1695	transcription start site region 1695	1684 bp upstream
Tssr1696	transcription start site region 1696	1741 bp upstream
Tssr49309	transcription start site region 49309	876 bp downstream
Tssr49310	transcription start site region 49310	534 bp downstream
Tssr49311	transcription start site region 49311	510 bp downstream
Tssr49312	transcription start site region 49312	119 bp downstream
Tssr49313	transcription start site region 49313	103 bp upstream
Tssr49314	transcription start site region 49314	374 bp upstream
Tssr49315	transcription start site region 49315	390 bp upstream
Tssr49316	transcription start site region 49316	1306 bp upstream
Tssr49317	transcription start site region 49317	1576 bp upstream
Tssr49318	transcription start site region 49318	1758 bp upstream
Tssr53919	transcription start site region 53919	1029 bp upstream
Tssr53920	transcription start site region 53920	994 bp upstream
Tssr53921	transcription start site region 53921	836 bp upstream
Tssr53922	transcription start site region 53922	820 bp upstream
Tssr53923	transcription start site region 53923	778 bp upstream
Tssr53924	transcription start site region 53924	759 bp upstream
Tssr53925	transcription start site region 53925	727 bp upstream
Tssr53926	transcription start site region 53926	693 bp upstream
Tssr53927	transcription start site region 53927	544 bp upstream
Tssr53928	transcription start site region 53928	531 bp upstream
Tssr53929	transcription start site region 53929	491 bp upstream
Tssr53930	transcription start site region 53930	420 bp upstream
Tssr53931	transcription start site region 53931	402 bp upstream
Tssr53932	transcription start site region 53932	384 bp upstream
Tssr53933	transcription start site region 53933	345 bp upstream
Tssr53934	transcription start site region 53934	312 bp upstream
Tssr53935	transcription start site region 53935	259 bp upstream
Tssr53936	transcription start site region 53936	236 bp upstream
Tssr53937	transcription start site region 53937	151 bp upstream
Tssr53938	transcription start site region 53938	110 bp upstream
Tssr53939	transcription start site region 53939	61 bp upstream
Tssr53940	transcription start site region 53940	105 bp downstream
Tssr53941	transcription start site region 53941	145 bp downstream
Tssr53942	transcription start site region 53942	204 bp downstream
Tssr53943	transcription start site region 53943	369 bp downstream
Tssr53944	transcription start site region 53944	418 bp downstream
Tssr53945	transcription start site region 53945	428 bp downstream
Tssr53946	transcription start site region 53946	449 bp downstream
Tssr53947	transcription start site region 53947	557 bp downstream
Tssr53948	transcription start site region 53948	1453 bp downstream
Tssr53949	transcription start site region 53949	1494 bp downstream
Tssr53950	transcription start site region 53950	1616 bp downstream
Tssr53951	transcription start site region 53951	1728 bp downstream
Tssr53952	transcription start site region 53952	1742 bp downstream
Tssr53953	transcription start site region 53953	1832 bp downstream