rs586630202 SNP Detail

Summary

• ID
  rs586630202
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70092119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GGGGGGAGGG ACAGGGAGAG
  G
  GAGAGGGAGA GGGAGAGGGA GAGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	WSB/EiJ
ss924605954	MGP_WTSI_X_71048513	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	WSB/EiJ
rs586630202					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924605954	MGP_WTSI_X_71048513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70092119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	1235 bp proximal
Gm61915	predicted gene, 61915	within coordinates
Gm61918	predicted gene, 61918	85 bp upstream
Mamld1	mastermind-like domain containing 1	1727 bp upstream
Rr691735	regulatory region 691735	873 bp proximal
Rr691736	regulatory region 691736	1451 bp proximal
Rr691737	regulatory region 691737	1569 bp proximal
Tssr161155	transcription start site region 161155	1552 bp upstream
Tssr161156	transcription start site region 161156	1613 bp upstream
Tssr161157	transcription start site region 161157	1647 bp upstream