rs586631456 SNP Detail

Summary

• ID
  rs586631456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC ATTGAAATGA AAATTGACCT
  R
  TAACAAAAGC AAAAATATAT CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917545953	MGP_WTSI_5_87693507	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586631456					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917545953	MGP_WTSI_5_87693507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csn2	casein beta			Intron
				Noncoding-Transcript-Variant
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12			355 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16			361 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1			461 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2			159 bp proximal
Tssr1529	transcription start site region 1529			1047 bp upstream
Tssr46883	transcription start site region 46883			994 bp upstream
Tssr46884	transcription start site region 46884			1007 bp upstream
Tssr46885	transcription start site region 46885			1035 bp upstream
Tssr46886	transcription start site region 46886			1063 bp upstream
Tssr46887	transcription start site region 46887			1080 bp upstream
Tssr46888	transcription start site region 46888			1149 bp upstream
Tssr46889	transcription start site region 46889			1198 bp upstream
Tssr46890	transcription start site region 46890			1213 bp upstream
Tssr46891	transcription start site region 46891			1257 bp upstream
Tssr46892	transcription start site region 46892			1261 bp upstream
Tssr46893	transcription start site region 46893			1289 bp upstream
Tssr46894	transcription start site region 46894			1336 bp upstream
Tssr46895	transcription start site region 46895			1359 bp upstream
Tssr46896	transcription start site region 46896			1454 bp upstream
Tssr51613	transcription start site region 51613			828 bp upstream
Tssr51614	transcription start site region 51614			765 bp upstream
Tssr51615	transcription start site region 51615			709 bp upstream
Tssr51616	transcription start site region 51616			675 bp upstream
Tssr51617	transcription start site region 51617			666 bp upstream
Tssr51618	transcription start site region 51618			1023 bp downstream
Tssr51619	transcription start site region 51619			1061 bp downstream
Tssr51620	transcription start site region 51620			1070 bp downstream
Tssr51621	transcription start site region 51621			1079 bp downstream
Tssr51622	transcription start site region 51622			1117 bp downstream
Tssr51623	transcription start site region 51623			1142 bp downstream
Tssr51624	transcription start site region 51624			1160 bp downstream
Tssr51625	transcription start site region 51625			1166 bp downstream
Tssr51626	transcription start site region 51626			1176 bp downstream
Tssr51627	transcription start site region 51627			1191 bp downstream
Tssr51628	transcription start site region 51628			1232 bp downstream
Tssr51629	transcription start site region 51629			1324 bp downstream
Tssr51630	transcription start site region 51630			1418 bp downstream
Tssr51631	transcription start site region 51631			1467 bp downstream
Tssr51632	transcription start site region 51632			1761 bp downstream