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rs586671485 SNP Detail
Summary
  • ID
    rs586671485
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128493 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CGATA CACCTATCCC CCCTCCACCT
R
TCATCAACCT CCTCCACATC TCCCC                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918712686 MGP_WTSI_7_44479069 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586671485 SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918712686 MGP_WTSI_7_44479069 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128493 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1690 bp downstream
Tssr2225 transcription start site region 2225 1650 bp downstream
Tssr2226 transcription start site region 2226 1124 bp downstream
Tssr2227 transcription start site region 2227 49 bp downstream
Tssr2228 transcription start site region 2228 1009 bp upstream
Tssr2229 transcription start site region 2229 1285 bp upstream
Tssr2230 transcription start site region 2230 1464 bp upstream
Tssr2231 transcription start site region 2231 1597 bp upstream
Tssr2232 transcription start site region 2232 1772 bp upstream
Tssr2233 transcription start site region 2233 1805 bp upstream
Tssr2234 transcription start site region 2234 1964 bp upstream
Tssr66236 transcription start site region 66236 2000 bp downstream
Tssr66237 transcription start site region 66237 1979 bp downstream
Tssr66238 transcription start site region 66238 1960 bp downstream
Tssr66239 transcription start site region 66239 1909 bp downstream
Tssr66240 transcription start site region 66240 1828 bp downstream
Tssr66241 transcription start site region 66241 1816 bp downstream
Tssr66242 transcription start site region 66242 1736 bp downstream
Tssr66243 transcription start site region 66243 1722 bp downstream
Tssr66244 transcription start site region 66244 1671 bp downstream
Tssr66245 transcription start site region 66245 1609 bp downstream
Tssr66246 transcription start site region 66246 1581 bp downstream
Tssr66247 transcription start site region 66247 1534 bp downstream
Tssr66248 transcription start site region 66248 1493 bp downstream
Tssr66249 transcription start site region 66249 1470 bp downstream
Tssr66250 transcription start site region 66250 1451 bp downstream
Tssr66251 transcription start site region 66251 1426 bp downstream
Tssr66252 transcription start site region 66252 1395 bp downstream
Tssr66253 transcription start site region 66253 1367 bp downstream
Tssr66254 transcription start site region 66254 1319 bp downstream
Tssr66255 transcription start site region 66255 1292 bp downstream
Tssr66256 transcription start site region 66256 1243 bp downstream
Tssr66257 transcription start site region 66257 1232 bp downstream
Tssr66258 transcription start site region 66258 1189 bp downstream
Tssr66259 transcription start site region 66259 1153 bp downstream
Tssr66260 transcription start site region 66260 1046 bp downstream
Tssr66261 transcription start site region 66261 1025 bp downstream
Tssr66262 transcription start site region 66262 1018 bp downstream
Tssr66263 transcription start site region 66263 1006 bp downstream
Tssr66264 transcription start site region 66264 982 bp downstream
Tssr66265 transcription start site region 66265 939 bp downstream
Tssr66266 transcription start site region 66266 922 bp downstream
Tssr66267 transcription start site region 66267 885 bp downstream
Tssr66268 transcription start site region 66268 869 bp downstream
Tssr66269 transcription start site region 66269 833 bp downstream
Tssr66270 transcription start site region 66270 798 bp downstream
Tssr66271 transcription start site region 66271 766 bp downstream
Tssr66272 transcription start site region 66272 714 bp downstream
Tssr66273 transcription start site region 66273 696 bp downstream
Tssr66274 transcription start site region 66274 691 bp downstream
Tssr66275 transcription start site region 66275 671 bp downstream
Tssr66276 transcription start site region 66276 651 bp downstream
Tssr66277 transcription start site region 66277 631 bp downstream
Tssr66278 transcription start site region 66278 587 bp downstream
Tssr66279 transcription start site region 66279 542 bp downstream
Tssr66280 transcription start site region 66280 520 bp downstream
Tssr66281 transcription start site region 66281 480 bp downstream
Tssr66282 transcription start site region 66282 463 bp downstream
Tssr66283 transcription start site region 66283 449 bp downstream
Tssr66284 transcription start site region 66284 437 bp downstream
Tssr66285 transcription start site region 66285 423 bp downstream
Tssr66286 transcription start site region 66286 384 bp downstream
Tssr66287 transcription start site region 66287 348 bp downstream
Tssr66288 transcription start site region 66288 323 bp downstream
Tssr66289 transcription start site region 66289 241 bp downstream
Tssr66290 transcription start site region 66290 203 bp downstream
Tssr66291 transcription start site region 66291 177 bp downstream
Tssr66292 transcription start site region 66292 145 bp downstream
Tssr66293 transcription start site region 66293 123 bp downstream
Tssr66294 transcription start site region 66294 99 bp downstream
Tssr66295 transcription start site region 66295 163 bp upstream
Tssr66296 transcription start site region 66296 296 bp upstream
Tssr66297 transcription start site region 66297 339 bp upstream
Tssr66298 transcription start site region 66298 364 bp upstream
Tssr66299 transcription start site region 66299 433 bp upstream
Tssr66300 transcription start site region 66300 440 bp upstream
Tssr66301 transcription start site region 66301 464 bp upstream
Tssr66302 transcription start site region 66302 478 bp upstream
Tssr66303 transcription start site region 66303 519 bp upstream
Tssr66304 transcription start site region 66304 527 bp upstream
Tssr66305 transcription start site region 66305 537 bp upstream
Tssr66306 transcription start site region 66306 571 bp upstream
Tssr66307 transcription start site region 66307 628 bp upstream
Tssr66308 transcription start site region 66308 681 bp upstream
Tssr66309 transcription start site region 66309 702 bp upstream
Tssr66310 transcription start site region 66310 740 bp upstream
Tssr66311 transcription start site region 66311 817 bp upstream
Tssr66312 transcription start site region 66312 833 bp upstream
Tssr66313 transcription start site region 66313 854 bp upstream
Tssr66314 transcription start site region 66314 862 bp upstream
Tssr66315 transcription start site region 66315 882 bp upstream
Tssr66316 transcription start site region 66316 941 bp upstream
Tssr66317 transcription start site region 66317 953 bp upstream
Tssr66318 transcription start site region 66318 998 bp upstream
Tssr66319 transcription start site region 66319 1021 bp upstream
Tssr66320 transcription start site region 66320 1048 bp upstream
Tssr66321 transcription start site region 66321 1066 bp upstream
Tssr66322 transcription start site region 66322 1086 bp upstream
Tssr66323 transcription start site region 66323 1132 bp upstream
Tssr66324 transcription start site region 66324 1161 bp upstream
Tssr66325 transcription start site region 66325 1191 bp upstream
Tssr66326 transcription start site region 66326 1232 bp upstream
Tssr66327 transcription start site region 66327 1246 bp upstream
Tssr66328 transcription start site region 66328 1262 bp upstream
Tssr66329 transcription start site region 66329 1301 bp upstream
Tssr66330 transcription start site region 66330 1320 bp upstream
Tssr66331 transcription start site region 66331 1334 bp upstream
Tssr66332 transcription start site region 66332 1355 bp upstream
Tssr66333 transcription start site region 66333 1403 bp upstream
Tssr66334 transcription start site region 66334 1415 bp upstream
Tssr66335 transcription start site region 66335 1424 bp upstream
Tssr66336 transcription start site region 66336 1433 bp upstream
Tssr66337 transcription start site region 66337 1451 bp upstream
Tssr66338 transcription start site region 66338 1507 bp upstream
Tssr66339 transcription start site region 66339 1558 bp upstream
Tssr66340 transcription start site region 66340 1603 bp upstream
Tssr66341 transcription start site region 66341 1648 bp upstream
Tssr66342 transcription start site region 66342 1710 bp upstream
Tssr66343 transcription start site region 66343 1742 bp upstream
Tssr66344 transcription start site region 66344 1887 bp upstream
Tssr66345 transcription start site region 66345 1920 bp upstream
Tssr66346 transcription start site region 66346 1976 bp upstream
Tssr72199 transcription start site region 72199 1586 bp upstream
Tssr72200 transcription start site region 72200 628 bp upstream
Tssr72201 transcription start site region 72201 118 bp upstream
Tssr72202 transcription start site region 72202 724 bp downstream
Tssr72203 transcription start site region 72203 1110 bp downstream
Tssr72204 transcription start site region 72204 1706 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory