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rs586708342 SNP Detail
Summary
  • ID
    rs586708342
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84492591 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CACCC CCAGACATAC AGAACTTTGT
    Y
    TAAAAAACAA AAACAAGGTA AACAA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
ss923740111 MGP_WTSI_17_84185163 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
rs586708342 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss923740111 MGP_WTSI_17_84185163 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84492591 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 435 bp proximal
Rr1582 regulatory region 1582 1363 bp downstream
Rr340271 regulatory region 340271 within coordinates
Tssr146043 transcription start site region 146043 1391 bp downstream
Tssr146044 transcription start site region 146044 583 bp upstream
Tssr146045 transcription start site region 146045 1927 bp upstream
Tssr149649 transcription start site region 149649 1571 bp upstream
Tssr149650 transcription start site region 149650 401 bp downstream
Tssr149651 transcription start site region 149651 439 bp downstream
Tssr149652 transcription start site region 149652 824 bp downstream
Tssr149653 transcription start site region 149653 872 bp downstream
Tssr149654 transcription start site region 149654 1012 bp downstream
Tssr149655 transcription start site region 149655 1108 bp downstream
Tssr149656 transcription start site region 149656 1198 bp downstream
Tssr149657 transcription start site region 149657 1414 bp downstream
Tssr149658 transcription start site region 149658 1471 bp downstream
Tssr149659 transcription start site region 149659 1506 bp downstream
Tssr149660 transcription start site region 149660 1537 bp downstream
Tssr149661 transcription start site region 149661 1586 bp downstream
Tssr149662 transcription start site region 149662 1645 bp downstream
Tssr149663 transcription start site region 149663 1709 bp downstream
Tssr149664 transcription start site region 149664 1750 bp downstream
Tssr149665 transcription start site region 149665 1795 bp downstream
Tssr149666 transcription start site region 149666 1864 bp downstream
Tssr149667 transcription start site region 149667 1953 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory