rs586708342 SNP Detail

Summary

• ID
  rs586708342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CCAGACATAC AGAACTTTGT
  Y
  TAAAAAACAA AAACAAGGTA AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss923740111	MGP_WTSI_17_84185163	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs586708342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923740111	MGP_WTSI_17_84185163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	435 bp proximal
Rr1582	regulatory region 1582	1363 bp downstream
Rr340271	regulatory region 340271	within coordinates
Tssr146043	transcription start site region 146043	1391 bp downstream
Tssr146044	transcription start site region 146044	583 bp upstream
Tssr146045	transcription start site region 146045	1927 bp upstream
Tssr149649	transcription start site region 149649	1571 bp upstream
Tssr149650	transcription start site region 149650	401 bp downstream
Tssr149651	transcription start site region 149651	439 bp downstream
Tssr149652	transcription start site region 149652	824 bp downstream
Tssr149653	transcription start site region 149653	872 bp downstream
Tssr149654	transcription start site region 149654	1012 bp downstream
Tssr149655	transcription start site region 149655	1108 bp downstream
Tssr149656	transcription start site region 149656	1198 bp downstream
Tssr149657	transcription start site region 149657	1414 bp downstream
Tssr149658	transcription start site region 149658	1471 bp downstream
Tssr149659	transcription start site region 149659	1506 bp downstream
Tssr149660	transcription start site region 149660	1537 bp downstream
Tssr149661	transcription start site region 149661	1586 bp downstream
Tssr149662	transcription start site region 149662	1645 bp downstream
Tssr149663	transcription start site region 149663	1709 bp downstream
Tssr149664	transcription start site region 149664	1750 bp downstream
Tssr149665	transcription start site region 149665	1795 bp downstream
Tssr149666	transcription start site region 149666	1864 bp downstream
Tssr149667	transcription start site region 149667	1953 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates