CACCC CCAGACATAC AGAACTTTGT Y TAAAAAACAA AAACAAGGTA AACAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss923740111 | MGP_WTSI_17_84185163 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
ZALENDE/EiJ |
||||
rs586708342 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss923740111 | MGP_WTSI_17_84185163 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr17:84492591 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9565 | CpG island 9565 | 435 bp proximal | ||||||
Rr1582 | regulatory region 1582 | 1363 bp downstream | ||||||
Rr340271 | regulatory region 340271 | within coordinates | ||||||
Tssr146043 | transcription start site region 146043 | 1391 bp downstream | ||||||
Tssr146044 | transcription start site region 146044 | 583 bp upstream | ||||||
Tssr146045 | transcription start site region 146045 | 1927 bp upstream | ||||||
Tssr149649 | transcription start site region 149649 | 1571 bp upstream | ||||||
Tssr149650 | transcription start site region 149650 | 401 bp downstream | ||||||
Tssr149651 | transcription start site region 149651 | 439 bp downstream | ||||||
Tssr149652 | transcription start site region 149652 | 824 bp downstream | ||||||
Tssr149653 | transcription start site region 149653 | 872 bp downstream | ||||||
Tssr149654 | transcription start site region 149654 | 1012 bp downstream | ||||||
Tssr149655 | transcription start site region 149655 | 1108 bp downstream | ||||||
Tssr149656 | transcription start site region 149656 | 1198 bp downstream | ||||||
Tssr149657 | transcription start site region 149657 | 1414 bp downstream | ||||||
Tssr149658 | transcription start site region 149658 | 1471 bp downstream | ||||||
Tssr149659 | transcription start site region 149659 | 1506 bp downstream | ||||||
Tssr149660 | transcription start site region 149660 | 1537 bp downstream | ||||||
Tssr149661 | transcription start site region 149661 | 1586 bp downstream | ||||||
Tssr149662 | transcription start site region 149662 | 1645 bp downstream | ||||||
Tssr149663 | transcription start site region 149663 | 1709 bp downstream | ||||||
Tssr149664 | transcription start site region 149664 | 1750 bp downstream | ||||||
Tssr149665 | transcription start site region 149665 | 1795 bp downstream | ||||||
Tssr149666 | transcription start site region 149666 | 1864 bp downstream | ||||||
Tssr149667 | transcription start site region 149667 | 1953 bp downstream | ||||||
Zfp36l2 | zinc finger protein 36, C3H type-like 2 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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